MolNFT v1 · #66697 · protein
Structure of human mthfs with ADP
3HY6 · 5-formyltetrahydrofolate cyclo-ligase: “Structure of human mthfs with ADP”. X-ray diffraction, 4 ligands (ADP, MG, NI), 2 pockets (best druggability 0.67). MolNFT v1 #66697 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3HY6
- Type
- protein
- Length
- 198 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5-formyltetrahydrofolate cyclo-ligase
- EC
- 6.3.3.2
- UniProt
- P49914
- Ligands
- ADP, MG, NI, PO4
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | protein | 198 | 35% helix, 20% strand | P49914 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · 12 copies · chains A
- NI · Nickel (II) ion · metal · 3 copies · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.67 | 0.88 | 26 | PO4, MG, ADP |
| 2 | 87 | 0.35 | 0.75 | 18 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49914
- Elsewhere: RCSB PDB 3HY6 · PDBe 3HY6 · UniProt P49914
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