MolNFT v1 · #66557 · protein
Crystal structure of prc-barrel domain protein from rhodopseudomonas palustris
3HTR · Uncharacterized prc-barrel domain protein: “Crystal structure of prc-barrel domain protein from rhodopseudomonas palustris”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.49). MolNFT v1 #66557 on GenesisL1: 3D…
- PDB
- 3HTR
- Type
- protein
- Length
- 188 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized prc-barrel domain protein
- UniProt
- Q6N0K4
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized prc-barrel domain protein | protein | 98 | 12% helix, 41% strand | Q6N0K4 |
| B | Uncharacterized prc-barrel domain protein | protein | 90 | 13% helix, 46% strand | Q6N0K4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.49 | 0.80 | 21 | empty |
| 2 | 54 | 0.31 | 0.76 | 14 | ZN, ACY |
Interfaces
1 interface between chains.
- A–B · 1388 Ų buried · 46 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3HTR · Crystal Structure of PRC-barrel Domain Protein from Rhodopseudomonas palustris · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N0K4
- Elsewhere: RCSB PDB 3HTR · PDBe 3HTR · UniProt Q6N0K4
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