MolNFT v1 · #66290 · protein
Crystal structure of BT_1490 (NP_810393.1) from bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution
3HLZ · Uncharacterized protein BT_1490: “Crystal structure of BT_1490 (NP_810393.1) from bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution”. X-ray diffraction, 1 ligand (CA), 6 pockets (best druggability 0.62). MolNFT v1 #66290 on…
- PDB
- 3HLZ
- Type
- protein
- Length
- 537 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein BT_1490
- UniProt
- Q8A7P4
- Ligands
- CA
- Pockets
- 6 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein BT_1490 | protein | 268 | 35% helix, 33% strand | Q8A7P4 |
| B | Uncharacterized protein BT_1490 | protein | 269 | 35% helix, 33% strand | Q8A7P4 |
Ligands and binding sites
- CA · Calcium ion · metal · chains B
- GOL · Glycerol · additive · 4 copies · chains A, B
- ACT · Acetate ion · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 306 | 0.62 | 0.79 | 32 | GOL |
| 2 | 336 | 0.57 | 0.76 | 40 | empty |
| 3 | 170 | 0.46 | 0.75 | 28 | empty |
| 4 | 62 | 0.34 | 0.77 | 18 | ACT |
| 5 | 73 | 0.33 | 0.75 | 15 | ACT |
Interfaces
1 interface between chains.
- A–B · 702 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 3HLZ · Crystal structure of BT_1490 (NP_810393.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A7P4
- Elsewhere: RCSB PDB 3HLZ · PDBe 3HLZ · UniProt Q8A7P4
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