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MolNFT v1 · #66243 · protein

Human carbonic anhydrase II in complex with (2,3,4,6-tetra-O-acetyl- beta-D-galactopyranosyl) -(1-4)-1,2,3,6-tetra-O-acetyl-1-thio-beta-D- glucopyranosylsulfonamide

3HKN · Carbonic anhydrase 2: “Human carbonic anhydrase II in complex with (2,3,4,6-tetra-O-acetyl- beta-D-galactopyranosyl)…”. X-ray diffraction, 3 ligands (Z3K, Z3L, ZN), 1 pocket (best druggability 0.59). MolNFT v1 #66243 on GenesisL1…

PDB
3HKN
Type
protein
Length
257 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
Z3K, Z3L, ZN
Pockets
1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 31% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein25715% helix, 31% strandP00918

Ligands and binding sites

  • Z3K · (1S)-2,3,6-tri-O-acetyl-1,5-anhydro-1-sulfamoyl-D-glucitol · ligand · chains A
  • Z3L · 2,3,4,6-tetra-O-acetyl-beta-D-galactopyranose · ligand · chains A
  • ZN · Zinc ion · metal · chains A
  • GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11840.590.8129Z3K

Compared structures

  • 3HKN · Human carbonic anhydrase II in complex with (2,3,4,6-Tetra-O-acetyl-beta-D-galactopyranosy… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 1.00

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