MolNFT v1 · #6624 · protein
Structure of human gamma fibrinogen 30 kd carboxyl terminal fragment
1FID: “Structure of human gamma fibrinogen 30 kd carboxyl terminal fragment”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.39). MolNFT v1 #6624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1FID
- Type
- protein
- Length
- 259 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gamma fibrinogen
- UniProt
- P02679
- Ligands
- CA
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gamma fibrinogen | protein | 259 | 17% helix, 27% strand | P02679 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.39 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1FID · Structure of human gamma fibrinogen 30 kd carboxyl terminal fragment · the same entry in another collection · chain A against A, TM-score 1.00
- P02679 · AlphaFold monomer V2.0 prediction for fibrinogen gamma chain (P02679) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02679
- Elsewhere: RCSB PDB 1FID · PDBe 1FID · UniProt P02679
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