MolNFT v1 · #65934 · protein

Structure of UGT78G1 complexed with udp

3HBJ · Flavonoid 3-O-glucosyltransferase: “Structure of UGT78G1 complexed with udp”. X-ray diffraction, 1 ligand (UDP), 2 pockets (best druggability 0.80). MolNFT v1 #65934 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3HBJ
Type: protein
Length: 445 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavonoid 3-O-glucosyltransferase
EC: 2.4.1.-
UniProt: A6XNC6
Ligands: UDP
Pockets: 2 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flavonoid 3-O-glucosyltransferase (EC 2.4.1.-)	protein	445	44% helix, 14% strand	A6XNC6

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	702	0.80	0.84	71	UDP
2	89	0.31	0.73	20	empty

Compared structures

3HBJ · Structure of UGT78G1 complexed with UDP · the same entry in another collection · chain A against A, TM-score 1.00
A6XNC6 · AlphaFold monomer V2.0 prediction for flavonoid 3-O-glucosyltransferase (A6XNC6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6XNC6
Elsewhere: RCSB PDB 3HBJ · PDBe 3HBJ · UniProt A6XNC6

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