MolNFT v1 · #65931 · protein
Structure of UGT78G1 complexed with myricetin and udp
3HBF · Flavonoid 3-O-glucosyltransferase: “Structure of UGT78G1 complexed with myricetin and udp”. X-ray diffraction, 2 ligands (UDP, MYC), 2 pockets (best druggability 0.82). MolNFT v1 #65931 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3HBF
- Type
- protein
- Length
- 443 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavonoid 3-O-glucosyltransferase
- EC
- 2.4.1.-
- UniProt
- A6XNC6
- Ligands
- UDP, MYC
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavonoid 3-O-glucosyltransferase (EC 2.4.1.-) | protein | 443 | 47% helix, 14% strand | A6XNC6 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- MYC · 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-chromen-4-one · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 831 | 0.82 | 0.84 | 82 | UDP, MYC |
| 2 | 105 | 0.33 | 0.73 | 28 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6XNC6
- Elsewhere: RCSB PDB 3HBF · PDBe 3HBF · UniProt A6XNC6
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