MolNFT v1 · #65861 · protein
Crystal structure of trypanosoma brucei ATG8
3H9D · Microtubule-associated protein 1A/1B, light chain 3…: “Crystal structure of trypanosoma brucei ATG8”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.53). MolNFT v1 #65861 on GenesisL1: 3D structure, binding sites…
- PDB
- 3H9D
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Microtubule-associated protein 1A/1B, light chain 3, putative
- UniProt
- Q582K6
- Ligands
- CA
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Microtubule-associated protein 1A/1B, light chain 3, putative | protein | 116 | 34% helix, 23% strand | Q582K6 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.53 | 0.76 | 33 | empty |
| 2 | 67 | 0.31 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 315 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 3H9D · Crystal Structure of Trypanosoma brucei ATG8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q582K6
- Elsewhere: RCSB PDB 3H9D · PDBe 3H9D · UniProt Q582K6
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