MolNFT v1 · #65681 · protein
Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus atcc 10987 at 1.79 a resolution
3H41 · NLP/P60 family protein: “Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus atcc 10987 at 1.79 a resolution”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.62). MolNFT v1 #65681 on…
- PDB
- 3H41
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NLP/P60 family protein
- UniProt
- Q736M3
- Ligands
- PO4
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NLP/P60 family protein | protein | 307 | 23% helix, 36% strand | Q736M3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 242 | 0.62 | 0.81 | 32 | empty |
| 2 | 99 | 0.40 | 0.76 | 19 | empty |
| 3 | 69 | 0.38 | 0.78 | 15 | PG4 |
Modifications
Observed in the structure: 6 modified, 1 d-amino (engineered, D-amino acid, oxidation).
Compared structures
- 3H41 · Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus atcc 10987… · the same entry in another collection · chain A against A, TM-score 1.00
- Q736M3 · AlphaFold monomer V2.0 prediction for gamma-D-glutamyl-L-lysine dipeptidyl-peptidase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q736M3
- Elsewhere: RCSB PDB 3H41 · PDBe 3H41 · UniProt Q736M3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.