Research workbench

Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus atcc 10987 at 1.79 a resolution

Analyse Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3H41
Type: protein
Length: 307 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NLP/P60 family protein
UniProt: Q736M3
Ligands: PO4
Pockets: 3 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NLP/P60 family protein	protein	307	23% helix, 36% strand	Q736M3

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
PG4 · Tetraethylene glycol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	242	0.62	0.81	32	empty
2	99	0.40	0.76	19	empty
3	69	0.38	0.78	15	PG4

Modifications

Observed in the structure: 6 modified, 1 d-amino (engineered, D-amino acid, oxidation).

Compared structures

3H41 · Crystal structure of a NLPC/P60 family protein (BCE_2878) from bacillus cereus atcc 10987… · the same entry in another collection · chain A against A, TM-score 1.00
Q736M3 · AlphaFold monomer V2.0 prediction for gamma-D-glutamyl-L-lysine dipeptidyl-peptidase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q736M3
Elsewhere: RCSB PDB 3H41 · PDBe 3H41 · UniProt Q736M3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.