MolNFT v1 · #65612 · protein
Crystal structure of primase repb'
3H20 · Replication protein B: “Crystal structure of primase repb'”. X-ray diffraction, 2 ligands (DPO, SO4), 1 pocket (best druggability 0.27). MolNFT v1 #65612 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3H20
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Replication protein B
- EC
- 2.7.7.-
- UniProt
- Q52349
- Ligands
- DPO, SO4
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication protein B (EC 2.7.7.-) | protein | 288 | 52% helix, 17% strand | Q52349 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.27 | 0.73 | 17 | DPO |
Compared structures
- 3H20 · Crystal structure of primase RepB' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q52349
- Elsewhere: RCSB PDB 3H20 · PDBe 3H20 · UniProt Q52349
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