MolNFT v1 · #65339 · protein
Crystal structure of DAPKL93G with N6-cyclopentyladenosine
3GU8 · Death-associated protein kinase 1: “Crystal structure of DAPKL93G with N6-cyclopentyladenosine”. X-ray diffraction, 1 ligand (3GU), 2 pockets (best druggability 0.74). MolNFT v1 #65339 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3GU8
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Death-associated protein kinase 1
- EC
- 2.7.11.1
- UniProt
- P53355
- Ligands
- 3GU
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Death-associated protein kinase 1 (EC 2.7.11.1) | protein | 278 | 35% helix, 20% strand | P53355 |
Ligands and binding sites
- 3GU · N6-cyclopentyladenosine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.74 | 0.82 | 56 | 3GU |
| 2 | 62 | 0.31 | 0.75 | 20 | empty |
Compared structures
- 3GU8 · Crystal structure of DAPKL93G with N6-cyclopentyladenosine · the same entry in another collection · chain A against A, TM-score 1.00
- P53355 · AlphaFold monomer V2.0 prediction for death-associated protein kinase 1 (P53355) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53355
- Elsewhere: RCSB PDB 3GU8 · PDBe 3GU8 · UniProt P53355
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