MolNFT v1 · #65206 · protein
Crystal structure of the bacteriophage PHI29 gene product 12 N- terminal fragment
3GQ7 · Preneck appendage protein: “Crystal structure of the bacteriophage PHI29 gene product 12 N- terminal fragment”. X-ray diffraction, 4 ligands (CA, MG, PO4), 1 pocket (best druggability 0.31). MolNFT v1 #65206 on GenesisL1: 3D…
- PDB
- 3GQ7
- Type
- protein
- Length
- 605 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Preneck appendage protein
- UniProt
- B3VMP8
- Ligands
- CA, MG, PO4, CO3
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Preneck appendage protein | protein | 605 | 6% helix, 47% strand | B3VMP8 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- MG · Magnesium ion · metal · chains A
- PO4 · Phosphate ion · ion · chains A
- CO3 · Carbonate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.31 | 0.75 | 17 | empty |
Compared structures
- 3GQ7 · Crystal Structure of the Bacteriophage Phi29 Gene Product 12 N-terminal Fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3VMP8
- Elsewhere: RCSB PDB 3GQ7 · PDBe 3GQ7 · UniProt B3VMP8
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