MolNFT v1 · #65067 · protein
Crystal structure of a putative methylmalonyl-coenzyme a epimerase from thermoanaerobacter tengcongensis at 2.0 a resolution
3GM5 · Lactoylglutathione lyase and related lyases: “Crystal structure of a putative methylmalonyl-coenzyme a epimerase from thermoanaerobacter tengcongensis at…”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.62).…
- PDB
- 3GM5
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lactoylglutathione lyase and related lyases
- EC
- 5.1.99.1
- UniProt
- Q8RCQ6
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lactoylglutathione lyase and related lyases (EC 5.1.99.1) | protein | 151 | 27% helix, 37% strand | Q8RCQ6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 202 | 0.62 | 0.82 | 26 | CIT |
| 2 | 77 | 0.36 | 0.76 | 17 | empty |
| 3 | 59 | 0.29 | 0.74 | 14 | empty |
Compared structures
- 3GM5 · Crystal structure of a putative methylmalonyl-coenzyme A epimerase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RCQ6
- Elsewhere: RCSB PDB 3GM5 · PDBe 3GM5 · UniProt Q8RCQ6
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