MolNFT v1 · #65049 · protein
Crystal structure of polynucleotide phosphorylase (pnpase) core
3GLL · Polyribonucleotide nucleotidyltransferase: “Crystal structure of polynucleotide phosphorylase (pnpase) core”. X-ray diffraction, 4 pockets (best druggability 0.78). MolNFT v1 #65049 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3GLL
- Type
- protein
- Length
- 494 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyribonucleotide nucleotidyltransferase
- EC
- 2.7.7.8
- UniProt
- A7ZS61
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | protein | 494 | 29% helix, 30% strand | A7ZS61 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1137 | 0.78 | 0.80 | 115 | empty |
| 2 | 156 | 0.46 | 0.76 | 26 | empty |
| 3 | 59 | 0.35 | 0.78 | 17 | empty |
| 4 | 70 | 0.30 | 0.74 | 15 | empty |
Compared structures
- 3GLL · Crystal structure of Polynucleotide Phosphorylase (PNPase) core · the same entry in another collection · chain A against A, TM-score 1.00
- A7ZS61 · AlphaFold monomer V2.0 prediction for polyribonucleotide nucleotidyltransferase (A7ZS61) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7ZS61
- Elsewhere: RCSB PDB 3GLL · PDBe 3GLL · UniProt A7ZS61
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.