MolNFT v1 · #64588 · protein
Crystal structure of dengue virus type 1 envelope protein in the postfusion conformation
3G7T: “Crystal structure of dengue virus type 1 envelope protein in the postfusion conformation”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.64). MolNFT v1 #64588 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3G7T
- Type
- protein
- Length
- 379 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope protein
- UniProt
- Q5USP2
- Ligands
- CL
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelope protein | protein | 379 | 6% helix, 49% strand | Q5USP2 |
Ligands and binding sites
- CL · Chloride ion · ion
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 326 | 0.64 | 0.80 | 37 | empty |
| 2 | 131 | 0.52 | 0.80 | 23 | empty |
| 3 | 126 | 0.41 | 0.75 | 27 | empty |
| 4 | 96 | 0.35 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3G7T · Crystal structure of dengue virus type 1 envelope protein in the postfusion conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5USP2
- Elsewhere: RCSB PDB 3G7T · PDBe 3G7T · UniProt Q5USP2
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