MolNFT v1 · #64420 · DNA
Crystal structure of D(CACGCG).D(CGCGTG) cocrystallized with MNCL2
3G2R · 5'-D(*CP*GP*TP*GP*CP*G)-3': “Crystal structure of D(CACGCG).D(CGCGTG) cocrystallized with MNCL2”. X-ray diffraction, 2 ligands (DCM, MN). MolNFT v1 #64420 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3G2R
- Type
- DNA
- Length
- 6 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*TP*GP*CP*G)-3'
- Ligands
- DCM, MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*TP*GP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- DCM · 2'-deoxycytidine-5'-monophosphate · ligand · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3G2R · Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3G2R · PDBe 3G2R
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