MolNFT v1 · #63817 · DNA
Influence of the incorporation of a cyclohexenyl nucleic acid (cena) residue onto the sequence D(GCGTGCG)/D(CGCACGC)
3FL6 · 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3': “Influence of the incorporation of a cyclohexenyl nucleic acid (cena) residue onto the sequence…”. X-ray diffraction, 1 ligand (NCO). MolNFT v1 #63817 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3FL6
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3'; 5'-D(*CP*GP*CP*AP*CP*GP*C)-3'
- Ligands
- NCO
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3' | dna | 7 | — | — |
| B, D | 5'-D(*CP*GP*CP*AP*CP*GP*C)-3' | dna | 7 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 7 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- C–D · 285 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- A–B · 285 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- A–C · 25 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 3FL6 · Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3FL6 · PDBe 3FL6
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