MolNFT v1 · #63726 · protein
Recombinant human gamma-fibrinogen carboxyl terminal fragment (residues 143-411) bound to calcium at pH 6.0: a further refinement of pdb entry 1FIB, and differs from 1FIB by the modelling of a cis peptide bond between residues K338 and C339
3FIB · Fibrinogen gamma chain residues: “Recombinant human gamma-fibrinogen carboxyl terminal fragment (residues 143-411) bound to calcium at pH 6.0…”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.44). MolNFT v1 #63726…
- PDB
- 3FIB
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fibrinogen gamma chain residues
- UniProt
- P02679
- Ligands
- CA
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fibrinogen gamma chain residues | protein | 249 | 16% helix, 29% strand | P02679 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.44 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3FIB · Recombinant human gamma-fibrinogen carboxyl terminal fragment (residues 143-411) bound to… · the same entry in another collection · chain A against A, TM-score 1.00
- P02679 · AlphaFold monomer V2.0 prediction for fibrinogen gamma chain (P02679) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02679
- Elsewhere: RCSB PDB 3FIB · PDBe 3FIB · UniProt P02679
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