MolNFT v1 · #63249 · protein
Structure of the tandemly repeated protein tyrosine phosphatase like phytase from mitsuokella multacida
3F41: “Structure of the tandemly repeated protein tyrosine phosphatase like phytase from mitsuokella multacida”. X-ray diffraction, 1 ligand (PO4), 9 pockets (best druggability 0.86). MolNFT v1 #63249 on GenesisL1: 3D structure, binding…
- PDB
- 3F41
- Type
- protein
- Length
- 1,180 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phytase
- EC
- 3.1.3.8
- UniProt
- A3QMF6
- Ligands
- PO4
- Pockets
- 9 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phytase (EC 3.1.3.8) | protein | 590 | 35% helix, 20% strand | A3QMF6 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1041 | 0.86 | 0.87 | 106 | empty |
| 2 | 352 | 0.68 | 0.82 | 54 | PO4 |
| 3 | 270 | 0.62 | 0.80 | 36 | PO4 |
| 4 | 235 | 0.58 | 0.79 | 34 | PO4 |
| 5 | 156 | 0.56 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 2142 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3F41 · Structure of the tandemly repeated protein tyrosine phosphatase like phytase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3QMF6
- Elsewhere: RCSB PDB 3F41 · PDBe 3F41 · UniProt A3QMF6
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