Research workbench
Structure of the tandemly repeated protein tyrosine phosphatase like phytase from mitsuokella multacida
Analyse Structure of the tandemly repeated protein tyrosine phosphatase like phytase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3F41
- Type
- protein
- Length
- 1,180 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phytase
- EC
- 3.1.3.8
- UniProt
- A3QMF6
- Ligands
- PO4
- Pockets
- 9 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phytase (EC 3.1.3.8) | protein | 590 | 35% helix, 20% strand | A3QMF6 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 4 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1041 | 0.86 | 0.87 | 106 | empty |
| 2 | 352 | 0.68 | 0.82 | 54 | PO4 |
| 3 | 270 | 0.62 | 0.80 | 36 | PO4 |
| 4 | 235 | 0.58 | 0.79 | 34 | PO4 |
| 5 | 156 | 0.56 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 2142 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 3F41 · Structure of the tandemly repeated protein tyrosine phosphatase like phytase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3QMF6
- Elsewhere: RCSB PDB 3F41 · PDBe 3F41 · UniProt A3QMF6
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