MolNFT v1 · #63064 · protein
Structure from the mobile metagenome of V. cholerae. integron cassette protein VCH_CASS1
3EY7 · Biphenyl-2,3-diol 1,2-dioxygenase III-related protein: “Structure from the mobile metagenome of V. cholerae. integron cassette protein VCH_CASS1”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.72). MolNFT v1…
- PDB
- 3EY7
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Biphenyl-2,3-diol 1,2-dioxygenase III-related protein
- UniProt
- Q9K3D3
- Ligands
- CA
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Biphenyl-2,3-diol 1,2-dioxygenase III-related protein | protein | 132 | 17% helix, 42% strand | Q9K3D3 |
| B | Biphenyl-2,3-diol 1,2-dioxygenase III-related protein | protein | 128 | 17% helix, 43% strand | Q9K3D3 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.72 | 0.98 | 24 | empty |
| 2 | 108 | 0.57 | 0.85 | 21 | CA |
| 3 | 121 | 0.56 | 0.84 | 19 | CA |
Interfaces
1 interface between chains.
- A–B · 2671 Ų buried · 36 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3EY7 · Structure from the mobile metagenome of V. Cholerae. Integron cassette protein VCH_CASS1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K3D3
- Elsewhere: RCSB PDB 3EY7 · PDBe 3EY7 · UniProt Q9K3D3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.