MolNFT v1 · #62641 · protein
Crystal structure of a putative periplasmic protein of unknown function (BVU_2443) from bacteroides vulgatus atcc 8482 at 1.64 a resolution
3ELG · Uncharacterized periplasmic protein: “Crystal structure of a putative periplasmic protein of unknown function (BVU_2443) from bacteroides vulgatus…”. X-ray diffraction, 3 pockets (best druggability 0.74). MolNFT v1 #62641 on…
- PDB
- 3ELG
- Type
- protein
- Length
- 253 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized periplasmic protein
- UniProt
- A6L337
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized periplasmic protein | protein | 127 | 20% helix, 39% strand | A6L337 |
| B | Uncharacterized periplasmic protein | protein | 126 | 21% helix, 39% strand | A6L337 |
Ligands and binding sites
- CIT · Citric acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 659 | 0.74 | 0.80 | 57 | CIT |
| 2 | 83 | 0.35 | 0.76 | 17 | empty |
| 3 | 53 | 0.27 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 897 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3ELG · Crystal structure of a putative periplasmic protein of unknown function (bvu_2443) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6L337
- Elsewhere: RCSB PDB 3ELG · PDBe 3ELG · UniProt A6L337
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