MolNFT v1 · #62494 · protein
The structure of a putative 4-hydroxybutyrate CoA-transferase from porphyromonas gingivalis W83
3EH7: “The structure of a putative 4-hydroxybutyrate CoA-transferase from porphyromonas gingivalis W83”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.77). MolNFT v1 #62494 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3EH7
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 4-hydroxybutyrate CoA-transferase
- UniProt
- Q7MWD3
- Ligands
- CL
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 4-hydroxybutyrate CoA-transferase | protein | 401 | 30% helix, 22% strand | Q7MWD3 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 561 | 0.77 | 0.83 | 66 | empty |
Modifications
Observed in the structure: 12 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 3EH7 · The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7MWD3
- Elsewhere: RCSB PDB 3EH7 · PDBe 3EH7 · UniProt Q7MWD3
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