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The structure of a putative 4-hydroxybutyrate CoA-transferase from porphyromonas gingivalis W83

Analyse The structure of a putative 4-hydroxybutyrate CoA-transferase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3EH7
Type: protein
Length: 401 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 4-hydroxybutyrate CoA-transferase
UniProt: Q7MWD3
Ligands: CL
Pockets: 1 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	4-hydroxybutyrate CoA-transferase	protein	401	30% helix, 22% strand	Q7MWD3

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	561	0.77	0.83	66	empty

Modifications

Observed in the structure: 12 modified, 1 disulfide (engineered, disulfide).

Compared structures

3EH7 · The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7MWD3
Elsewhere: RCSB PDB 3EH7 · PDBe 3EH7 · UniProt Q7MWD3

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