MolNFT v1 · #61778 · protein
PAK1 peptide bound LC8
3DVP · Dynein light chain 1, cytoplasmic: “PAK1 peptide bound LC8”. X-ray diffraction. MolNFT v1 #61778 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DVP
- Type
- protein
- Length
- 188 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dynein light chain 1, cytoplasmic; P21 activated kinase peptide
- UniProt
- Q24117, Q13153
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dynein light chain 1, cytoplasmic | protein | 85 | 39% helix, 41% strand | Q24117 |
| C, D | P21 activated kinase peptide | protein | 9 | 0% helix, 67% strand | Q13153 |
Interfaces
5 interfaces between chains.
- A–B · 923 Ų buried · 31 hydrogen bonds · protein-protein
- A–C · 609 Ų buried · 16 hydrogen bonds · protein-protein
- B–D · 598 Ų buried · 14 hydrogen bonds · protein-protein
- A–D · 160 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 155 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3DVP · Pak1 peptide bound LC8 · the same entry in another collection · chain A against A, TM-score 1.00
- Q24117 · AlphaFold monomer V2.0 prediction for dynein light chain 1, cytoplasmic (Q24117) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q13153 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase pak 1 (Q13153) · a predicted model of the same protein · chain C against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q24117
- Every structure of UniProt Q13153
- Elsewhere: RCSB PDB 3DVP · PDBe 3DVP · UniProt Q24117 · UniProt Q13153
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