MolNFT v1 · #61713 · protein
Crystal structure of putative methyltransferase-MM_2633 from methanosarcina mazei .
3DTN · Putative methyltransferase MM_2633: “Crystal structure of putative methyltransferase-MM_2633 from methanosarcina mazei .”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.71). MolNFT v1 #61713 on GenesisL1: 3D…
- PDB
- 3DTN
- Type
- protein
- Length
- 433 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative methyltransferase MM_2633
- UniProt
- Q8PTS9
- Ligands
- CA
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative methyltransferase MM_2633 | protein | 220 | 41% helix, 24% strand | Q8PTS9 |
| B | Putative methyltransferase MM_2633 | protein | 213 | 45% helix, 25% strand | Q8PTS9 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 434 | 0.71 | 0.81 | 44 | empty |
| 2 | 400 | 0.63 | 0.78 | 45 | empty |
| 3 | 66 | 0.50 | 0.85 | 21 | empty |
| 4 | 89 | 0.33 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1040 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3DTN · Crystal structure of putative Methyltransferase-MM_2633 from Methanosarcina mazei . · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PTS9
- Elsewhere: RCSB PDB 3DTN · PDBe 3DTN · UniProt Q8PTS9
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