MolNFT v1 · #61517 · protein
Fitting of the EEF2 crystal structure into the cryo-EM density MAP of the EEF2.80S.ALF4-.GDP complex
3DNY · Elongation factor 2: “Fitting of the EEF2 crystal structure into the cryo-EM density MAP of the EEF2.80S.ALF4-.GDP complex”. Electron microscopy, 4 pockets (best druggability 0.53). MolNFT v1 #61517 on GenesisL1: 3D structure…
- PDB
- 3DNY
- Type
- protein
- Length
- 654 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor 2
- UniProt
- P32324
- Pockets
- 4 · best druggability 0.53
Structure
electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | Elongation factor 2 | protein | 654 | 0% helix, 0% strand | P32324 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 285 | 0.53 | 0.73 | 63 | empty |
| 2 | 166 | 0.45 | 0.73 | 34 | empty |
| 3 | 75 | 0.33 | 0.73 | 19 | empty |
| 4 | 70 | 0.33 | 0.73 | 16 | empty |
Compared structures
- 3DNY · Fitting of the eEF2 crystal structure into the cryo-EM density map of the… · the same entry in another collection · chain T against T, TM-score 1.00
- P32324 · AlphaFold monomer V2.0 prediction for elongation factor 2 (P32324) · a predicted model of the same protein · chain T against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32324
- Elsewhere: RCSB PDB 3DNY · PDBe 3DNY · UniProt P32324
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