MolNFT v1 · #6135 · protein
A new target for shigellosis: rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase
1F3E · Queuine tRNA-ribosyltransferase: “A new target for shigellosis: rational design and crystallographic studies of inhibitors of tRNA-guanine…”. X-ray diffraction, 2 ligands (DPZ, ZN), 2 pockets (best druggability 0.66). MolNFT v1…
- PDB
- 1F3E
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Queuine tRNA-ribosyltransferase
- EC
- 2.4.2.29
- UniProt
- P28720
- Ligands
- DPZ, ZN
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Queuine tRNA-ribosyltransferase (EC 2.4.2.29) | protein | 372 | 45% helix, 19% strand | P28720 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.66 | 0.85 | 31 | DPZ |
| 2 | 74 | 0.36 | 0.77 | 17 | empty |
Compared structures
- 1F3E · A new target for shigellosis: rational design and crystallographic studies of inhibitors… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28720
- Elsewhere: RCSB PDB 1F3E · PDBe 1F3E · UniProt P28720
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