MolNFT v1 · #61237 · protein
D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
3DFN · Fructose-bisphosphate aldolase a: “D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle”. X-ray diffraction, 20 pockets (best druggability 0.88). MolNFT v1 #61237 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3DFN
- Type
- protein
- Length
- 1,414 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fructose-bisphosphate aldolase a
- EC
- 4.1.2.13
- UniProt
- P00883
- Pockets
- 20 · best druggability 0.88
Structure
x-ray diffraction · 3 distinct chains · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fructose-bisphosphate aldolase a (EC 4.1.2.13) | protein | 350 | 47% helix, 15% strand | P00883 |
| C | Fructose-bisphosphate aldolase a (EC 4.1.2.13) | protein | 353 | 46% helix, 15% strand | P00883 |
| D | Fructose-bisphosphate aldolase a (EC 4.1.2.13) | protein | 361 | 45% helix, 15% strand | P00883 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 961 | 0.88 | 0.90 | 110 | empty |
| 2 | 586 | 0.84 | 0.89 | 78 | empty |
| 3 | 580 | 0.81 | 0.87 | 79 | empty |
| 4 | 603 | 0.75 | 0.81 | 45 | empty |
| 5 | 112 | 0.67 | 0.90 | 37 | empty |
Interfaces
6 interfaces between chains.
- B–C · 1648 Ų buried · 24 hydrogen bonds · protein-protein
- A–D · 1510 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 1237 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 1225 Ų buried · 15 hydrogen bonds · protein-protein
- B–D · 106 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3DFN · D33N mutant fructose-1,6-bisphosphate aldolase from rabbit muscle · the same entry in another collection · chain D against D, TM-score 1.00
- P00883 · AlphaFold monomer V2.0 prediction for fructose-bisphosphate aldolase a (P00883) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00883
- Elsewhere: RCSB PDB 3DFN · PDBe 3DFN · UniProt P00883
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