MolNFT v1 · #61227 · protein
Crystal structure of a glycine-rich loop mutant of the death associated protein kinase catalytic domain with amppnp
3DFC · Death-associated protein kinase 1: “Crystal structure of a glycine-rich loop mutant of the death associated protein kinase catalytic domain with…”. X-ray diffraction, 1 ligand (ANP), 3 pockets (best druggability 0.69). MolNFT v1…
- PDB
- 3DFC
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Death-associated protein kinase 1
- EC
- 2.7.11.1
- UniProt
- P53355
- Ligands
- ANP
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Death-associated protein kinase 1 (EC 2.7.11.1) | protein | 280 | 35% helix, 20% strand | P53355 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.69 | 0.85 | 30 | ANP |
| 2 | 96 | 0.44 | 0.79 | 22 | empty |
| 3 | 56 | 0.31 | 0.76 | 13 | empty |
Compared structures
- 3DFC · Crystal structure of a glycine-rich loop mutant of the death associated protein kinase… · the same entry in another collection · chain B against B, TM-score 1.00
- P53355 · AlphaFold monomer V2.0 prediction for death-associated protein kinase 1 (P53355) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53355
- Elsewhere: RCSB PDB 3DFC · PDBe 3DFC · UniProt P53355
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