MolNFT v1 · #61200 · protein

Crystal structure of TOC33 from arabidopsis thaliana, dimerization deficient mutant R130A

3DEF · T7I23.11 protein: “Crystal structure of TOC33 from arabidopsis thaliana, dimerization deficient mutant R130A”. X-ray diffraction, 2 ligands (GDP, MG), 2 pockets (best druggability 0.58). MolNFT v1 #61200 on GenesisL1: 3D structure…

PDB: 3DEF
Type: protein
Length: 244 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T7I23.11 protein
EC: 3.6.5.2
UniProt: O23680
Ligands: GDP, MG
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T7I23.11 protein (EC 3.6.5.2)	protein	244	41% helix, 21% strand	O23680

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.58	0.81	31	MG, GDP
2	75	0.37	0.77	21	empty

Compared structures

3DEF · Crystal structure of Toc33 from Arabidopsis thaliana, dimerization deficient mutant R130A · the same entry in another collection · chain A against A, TM-score 1.00
O23680 · AlphaFold monomer V2.0 prediction for translocase of chloroplast 33, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O23680
Elsewhere: RCSB PDB 3DEF · PDBe 3DEF · UniProt O23680

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