MolNFT v1 · #61120 · protein
Crystal structure of a manganese superoxide dismutases from caenorhabditis elegans
3DC5 · Superoxide dismutase [mn] 2: “Crystal structure of a manganese superoxide dismutases from caenorhabditis elegans”. X-ray diffraction, 1 ligand (MN), 1 pocket (best druggability 0.57). MolNFT v1 #61120 on GenesisL1: 3D structure…
- PDB
- 3DC5
- Type
- protein
- Length
- 389 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase [mn] 2
- EC
- 1.15.1.1
- UniProt
- P41977
- Ligands
- MN
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Superoxide dismutase [mn] 2 (EC 1.15.1.1) | protein | 194 | 57% helix, 13% strand | P41977 |
| C | Superoxide dismutase [mn] 2 (EC 1.15.1.1) | protein | 195 | 56% helix, 13% strand | P41977 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.57 | 0.83 | 30 | empty |
Interfaces
1 interface between chains.
- A–C · 832 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 3DC5 · Crystal Structure of a manganese superoxide dismutases from Caenorhabditis elegans · the same entry in another collection · chain A against A, TM-score 1.00
- P41977 · AlphaFold monomer V2.0 prediction for superoxide dismutase [mn] 2, mitochondrial (P41977) · a predicted model of the same protein · chain C against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41977
- Elsewhere: RCSB PDB 3DC5 · PDBe 3DC5 · UniProt P41977
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