MolNFT v1 · #61115 · protein

Crystal structure of native alpha-amylase from bacillus sp. kr-8104

3DC0: “Crystal structure of native alpha-amylase from bacillus sp. kr-8104”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.59). MolNFT v1 #61115 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3DC0
Type: protein
Length: 422 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-amylase
EC: 3.2.1.1
UniProt: B3GQD0
Ligands: CA
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha-amylase (EC 3.2.1.1)	protein	422	32% helix, 23% strand	B3GQD0

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	284	0.59	0.78	40	empty

Compared structures

3DC0 · Crystal structure of native alpha-amylase from Bacillus sp. KR-8104 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3GQD0
Elsewhere: RCSB PDB 3DC0 · PDBe 3DC0 · UniProt B3GQD0

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