MolNFT v1 · #61082 · protein
Crystal structure of putative pyridoxamine 5'-phosphate oxidase (NP_472219.1) from listeria innocua at 2.00 a resolution
3DB0 · LIN2891 protein: “Crystal structure of putative pyridoxamine 5'-phosphate oxidase (NP_472219.1) from listeria innocua at 2.00 a…”. X-ray diffraction, 2 pockets (best druggability 0.45). MolNFT v1 #61082 on GenesisL1: 3D structure…
- PDB
- 3DB0
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LIN2891 protein
- UniProt
- Q926Z8
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LIN2891 protein | protein | 116 | 21% helix, 45% strand | Q926Z8 |
| B | LIN2891 protein | protein | 124 | 24% helix, 45% strand | Q926Z8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.45 | 0.78 | 27 | empty |
| 2 | 139 | 0.43 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 940 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3DB0 · Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q926Z8
- Elsewhere: RCSB PDB 3DB0 · PDBe 3DB0 · UniProt Q926Z8
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