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Crystal structure of putative pyridoxamine 5'-phosphate oxidase (NP_472219.1) from listeria innocua at 2.00 a resolution

Analyse Crystal structure of putative pyridoxamine 5'-phosphate oxidase (NP_472219.1)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3DB0
Type: protein
Length: 240 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LIN2891 protein
UniProt: Q926Z8
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 2 distinct chains · 23% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LIN2891 protein	protein	116	21% helix, 45% strand	Q926Z8
B	LIN2891 protein	protein	124	24% helix, 45% strand	Q926Z8

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.45	0.78	27	empty
2	139	0.43	0.75	19	empty

Interfaces

1 interface between chains.

A–B · 940 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3DB0 · Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q926Z8
Elsewhere: RCSB PDB 3DB0 · PDBe 3DB0 · UniProt Q926Z8

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