MolNFT v1 · #61070 · protein
Crystal structure of a putative phosphate (EUBREC_1417) from eubacterium rectale at 1.80 a resolution
3DAO: “Crystal structure of a putative phosphate (EUBREC_1417) from eubacterium rectale at 1.80 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.76). MolNFT v1 #61070 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3DAO
- Type
- protein
- Length
- 539 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative phosphate
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative phosphate | protein | 265 | 38% helix, 24% strand | — |
| B | Putative phosphate | protein | 274 | 38% helix, 23% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1040 | 0.76 | 0.79 | 92 | CIT |
| 2 | 527 | 0.66 | 0.77 | 51 | 1PE |
Interfaces
1 interface between chains.
- A–B · 687 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3DAO · Crystal structure of a putative phosphate (EUBREC_1417) from eubacterium rectale at 1.80… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3DAO · PDBe 3DAO
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