MolNFT v1 · #60747 · protein

Crystal structure of S100B in the calcium and zinc loaded state at pH 10.0

3D10 · Protein S100-B: “Crystal structure of S100B in the calcium and zinc loaded state at pH 10.0”. X-ray diffraction, 2 ligands (CA, ZN). MolNFT v1 #60747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3D10
Type: protein
Length: 183 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein S100-B
UniProt: P04271
Ligands: CA, ZN

Structure

x-ray diffraction · 2 distinct chains · 62% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein S100-B	protein	92	62% helix, 2% strand	P04271
B	Protein S100-B	protein	91	63% helix, 2% strand	P04271

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A, B
ZN · Zinc ion · metal · 2 copies · chains A, B
PGE · Triethylene glycol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1409 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

3D10 · Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 10.0 · the same entry in another collection · chain A against A, TM-score 1.00
P04271 · AlphaFold monomer V2.0 prediction for protein S100-B (P04271) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04271
Elsewhere: RCSB PDB 3D10 · PDBe 3D10 · UniProt P04271

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.