MolNFT v1 · #60343 · protein

Crystal structure of human nudix motif 16 (NUDT16)

3COU · Nucleoside diphosphate-linked moiety X motif 16: “Crystal structure of human nudix motif 16 (NUDT16)”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #60343 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3COU
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoside diphosphate-linked moiety X motif 16
EC: 3.6.1.-
UniProt: Q96DE0
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate-linked moiety X motif 16 (EC 3.6.1.-)	protein	180	31% helix, 34% strand	Q96DE0

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	208	0.56	0.79	31	empty

Compared structures

3COU · Crystal structure of human Nudix motif 16 (NUDT16) · the same entry in another collection · chain A against A, TM-score 1.00
Q96DE0 · AlphaFold monomer V2.0 prediction for U8 snorna-decapping enzyme (Q96DE0) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96DE0
Elsewhere: RCSB PDB 3COU · PDBe 3COU · UniProt Q96DE0

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