MolNFT v1 · #60303 · protein

GDP-bound structue of tm ylqf

3CNO · Putative uncharacterized protein: “GDP-bound structue of tm ylqf”. X-ray diffraction, 1 ligand (GDP), 2 pockets (best druggability 0.33). MolNFT v1 #60303 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3CNO
Type: protein
Length: 227 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein
UniProt: Q9WZM6
Ligands: GDP
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein	protein	227	39% helix, 15% strand	Q9WZM6

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.33	0.78	16	GDP
2	63	0.26	0.72	18	empty

Compared structures

3CNO · GDP-bound structue of TM YlqF · the same entry in another collection · chain A against A, TM-score 1.00
Q9WZM6 · AlphaFold monomer V2.0 prediction for ribosome biogenesis GTPase a (Q9WZM6) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WZM6
Elsewhere: RCSB PDB 3CNO · PDBe 3CNO · UniProt Q9WZM6

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