MolNFT v1 · #59958 · protein

Crystal structure of the E. COLI KH/S1 domain truncated pnpase

3CDJ · Polynucleotide phosphorylase: “Crystal structure of the E. COLI KH/S1 domain truncated pnpase”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #59958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3CDJ
Type: protein
Length: 445 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polynucleotide phosphorylase
EC: 2.7.7.8
Pockets: 4 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polynucleotide phosphorylase (EC 2.7.7.8)	protein	445	23% helix, 32% strand	—

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	594	0.65	0.76	62	empty
2	301	0.57	0.77	44	empty
3	65	0.51	0.86	24	empty
4	50	0.34	0.79	15	empty

Compared structures

3CDJ · Crystal structure of the E. coli KH/S1 domain truncated PNPase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3CDJ · PDBe 3CDJ

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