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Crystal structure of the E. COLI KH/S1 domain truncated pnpase
Analyse Crystal structure of the E. COLI KH/S1 domain truncated pnpase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CDJ
- Type
- protein
- Length
- 445 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polynucleotide phosphorylase
- EC
- 2.7.7.8
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polynucleotide phosphorylase (EC 2.7.7.8) | protein | 445 | 23% helix, 32% strand | — |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 594 | 0.65 | 0.76 | 62 | empty |
| 2 | 301 | 0.57 | 0.77 | 44 | empty |
| 3 | 65 | 0.51 | 0.86 | 24 | empty |
| 4 | 50 | 0.34 | 0.79 | 15 | empty |
Compared structures
- 3CDJ · Crystal structure of the E. coli KH/S1 domain truncated PNPase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3CDJ · PDBe 3CDJ
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