MolNFT v1 · #59651 · protein
Crystal structure of viod hydroxylase in complex with FAD from chromobacterium violaceum. northeast structural genomics consortium target CVR158
3C4A · Probable tryptophan hydroxylase viod: “Crystal structure of viod hydroxylase in complex with FAD from chromobacterium violaceum. northeast…”. X-ray diffraction, 1 ligand (FAD), 3 pockets (best druggability 0.82). MolNFT v1 #59651 on…
- PDB
- 3C4A
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable tryptophan hydroxylase viod
- EC
- 1.-.-.-
- UniProt
- Q9S3U8
- Ligands
- FAD
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable tryptophan hydroxylase viod (EC 1.-.-.-) | protein | 365 | 39% helix, 23% strand | Q9S3U8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1047 | 0.82 | 0.83 | 98 | FAD |
| 2 | 54 | 0.37 | 0.80 | 19 | empty |
| 3 | 50 | 0.36 | 0.79 | 10 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3C4A · Crystal structure of vioD hydroxylase in complex with FAD from Chromobacterium violaceum.… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9S3U8 · AlphaFold monomer V2.0 prediction for protodeoxyviolaceinate monooxygenase (Q9S3U8) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9S3U8
- Elsewhere: RCSB PDB 3C4A · PDBe 3C4A · UniProt Q9S3U8
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