MolNFT v1 · #5926 · protein
Crystal structure of yeast guanylate kinase in complex with guanosine-5'-monophosphate
1EX7: “Crystal structure of yeast guanylate kinase in complex with guanosine-5'-monophosphate”. X-ray diffraction, 2 ligands (5GP, SO4), 1 pocket (best druggability 0.68). MolNFT v1 #5926 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1EX7
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanylate kinase
- EC
- 2.7.4.8
- UniProt
- P15454
- Ligands
- 5GP, SO4
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanylate kinase (EC 2.7.4.8) | protein | 186 | 44% helix, 22% strand | P15454 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 519 | 0.68 | 0.79 | 50 | SO4, 5GP |
Compared structures
- 1EX7 · Crystal structure of yeast guanylate kinase in complex with guanosine-5'-monophosphate · the same entry in another collection · chain A against A, TM-score 1.00
- P15454 · AlphaFold monomer V2.0 prediction for guanylate kinase (P15454) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15454
- Elsewhere: RCSB PDB 1EX7 · PDBe 1EX7 · UniProt P15454
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