MolNFT v1 · #59046 · protein
Crystal structures of yoph complexed with pvsn and pvs, inhibitors of yoph which co-valent bind to cys of active site
3BLT · Tyrosine-protein phosphatase yoph: “Crystal structures of yoph complexed with pvsn and pvs, inhibitors of yoph which co-valent bind to cys of…”. X-ray diffraction, 1 ligand (PSY), 1 pocket (best druggability 0.55). MolNFT v1 #59046…
- PDB
- 3BLT
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase yoph
- EC
- 3.1.3.48
- UniProt
- P15273
- Ligands
- PSY
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase yoph (EC 3.1.3.48) | protein | 282 | 38% helix, 21% strand | P15273 |
Ligands and binding sites
- PSY · phenyl ethenesulfonate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.55 | 0.78 | 22 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 3BLT · Crystal structures of YopH complexed with PVSN and PVS, inhibitors of YopH which… · the same entry in another collection · chain A against A, TM-score 1.00
- P15273 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase yoph (P15273) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15273
- Elsewhere: RCSB PDB 3BLT · PDBe 3BLT · UniProt P15273
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