MolNFT v1 · #58849 · protein
Crystal structure of truncated fimg (fimgt) in complex with the donor strand peptide of fimf (dsf)
3BFW · Protein fimg: “Crystal structure of truncated fimg (fimgt) in complex with the donor strand peptide of fimf (dsf)”. X-ray diffraction, 1 ligand (YT3), 1 pocket (best druggability 0.39). MolNFT v1 #58849 on GenesisL1: 3D structure…
- PDB
- 3BFW
- Type
- protein
- Length
- 288 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein fimg; Protein fimf
- UniProt
- P08190, P08189
- Ligands
- YT3
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 3 distinct chains · 2% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Protein fimg | protein | 132 | 2% helix, 51% strand | P08190 |
| B | Protein fimf | protein | 11 | 0% helix, 82% strand | P08189 |
| D | Protein fimf | protein | 13 | 0% helix, 77% strand | P08189 |
Ligands and binding sites
- YT3 · Yttrium (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.39 | 0.75 | 21 | empty |
Interfaces
3 interfaces between chains.
- C–D · 1223 Ų buried · 40 hydrogen bonds · protein-protein
- A–B · 1082 Ų buried · 30 hydrogen bonds · protein-protein
- A–C · 250 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3BFW · Crystal structure of truncated FimG (FimGt) in complex with the donor strand peptide of… · the same entry in another collection · chain D against D, TM-score 1.00
- P08190 · AlphaFold monomer V2.0 prediction for protein fimg (P08190) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P08189 · AlphaFold monomer V2.0 prediction for protein fimf (P08189) · a predicted model of the same protein · chain B against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08190
- Every structure of UniProt P08189
- Elsewhere: RCSB PDB 3BFW · PDBe 3BFW · UniProt P08190 · UniProt P08189
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