Research workbench
Crystal structure of truncated fimg (fimgt) in complex with the donor strand peptide of fimf (dsf)
Analyse Crystal structure of truncated fimg (fimgt) in complex with the donor strand… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3BFW
- Type
- protein
- Length
- 288 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein fimg; Protein fimf
- UniProt
- P08190, P08189
- Ligands
- YT3
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 3 distinct chains · 2% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Protein fimg | protein | 132 | 2% helix, 51% strand | P08190 |
| B | Protein fimf | protein | 11 | 0% helix, 82% strand | P08189 |
| D | Protein fimf | protein | 13 | 0% helix, 77% strand | P08189 |
Ligands and binding sites
- YT3 · Yttrium (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.39 | 0.75 | 21 | empty |
Interfaces
3 interfaces between chains.
- C–D · 1223 Ų buried · 40 hydrogen bonds · protein-protein
- A–B · 1082 Ų buried · 30 hydrogen bonds · protein-protein
- A–C · 250 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3BFW · Crystal structure of truncated FimG (FimGt) in complex with the donor strand peptide of… · the same entry in another collection · chain D against D, TM-score 1.00
- P08190 · AlphaFold monomer V2.0 prediction for protein fimg (P08190) · a predicted model of the same protein · chain A against A, TM-score 0.99
- P08189 · AlphaFold monomer V2.0 prediction for protein fimf (P08189) · a predicted model of the same protein · chain B against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08190
- Every structure of UniProt P08189
- Elsewhere: RCSB PDB 3BFW · PDBe 3BFW · UniProt P08190 · UniProt P08189
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