MolNFT v1 · #58691 · protein
Crystal structure of TOC33 from arabidopsis thaliana in complex with GDP and MG2+
3BB3 · T7I23.11 protein: “Crystal structure of TOC33 from arabidopsis thaliana in complex with GDP and MG2+”. X-ray diffraction, 2 ligands (GDP, MG), 2 pockets (best druggability 0.51). MolNFT v1 #58691 on GenesisL1: 3D structure, binding…
- PDB
- 3BB3
- Type
- protein
- Length
- 242 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T7I23.11 protein
- UniProt
- O23680
- Ligands
- GDP, MG
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T7I23.11 protein | protein | 242 | 38% helix, 22% strand | O23680 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.51 | 0.78 | 28 | GDP, MG |
| 2 | 68 | 0.32 | 0.75 | 16 | empty |
Compared structures
- 3BB3 · Crystal structure of Toc33 from Arabidopsis thaliana in complex with GDP and Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
- O23680 · AlphaFold monomer V2.0 prediction for translocase of chloroplast 33, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O23680
- Elsewhere: RCSB PDB 3BB3 · PDBe 3BB3 · UniProt O23680
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