MolNFT v1 · #58169 · protein
Crystal structure of glycinamide ribonucleotide transformylase 1 from geobacillus kaustophilus
3AV3 · Phosphoribosylglycinamide formyltransferase: “Crystal structure of glycinamide ribonucleotide transformylase 1 from geobacillus kaustophilus”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.64). MolNFT v1 #58169 on…
- PDB
- 3AV3
- Type
- protein
- Length
- 188 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoribosylglycinamide formyltransferase
- EC
- 2.1.2.2
- UniProt
- Q5L3C9
- Ligands
- MG
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) | protein | 188 | 39% helix, 22% strand | Q5L3C9 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 337 | 0.64 | 0.80 | 41 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3AV3 · Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L3C9
- Elsewhere: RCSB PDB 3AV3 · PDBe 3AV3 · UniProt Q5L3C9
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