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Crystal structure of glycinamide ribonucleotide transformylase 1 from geobacillus kaustophilus

Analyse Crystal structure of glycinamide ribonucleotide transformylase 1 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3AV3
Type: protein
Length: 188 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoribosylglycinamide formyltransferase
EC: 2.1.2.2
UniProt: Q5L3C9
Ligands: MG
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	protein	188	39% helix, 22% strand	Q5L3C9

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	337	0.64	0.80	41	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3AV3 · Crystal structure of glycinamide ribonucleotide transformylase 1 from Geobacillus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5L3C9
Elsewhere: RCSB PDB 3AV3 · PDBe 3AV3 · UniProt Q5L3C9

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